Cabana Documentation

Contents:

• What is Cabana?
  • Overview
  • Key Features
  • Application Areas
  • Versions and Availability
• Installation
  • System Requirements
  • Installation Instructions
• Image Analysis Workflow
  • Segmentation
  • Fibre Detection
  • Gap Analysis
  • Batch Processing
  • Cabana Outputs
• Parameter Details
  • Configurations
  • Segmentation Parameters
  • Fibre Detection and Quantification
  • Gap Analysis Parameters
• List of Cabana Read-outs (QuantificationResults.csv)
  • Statistics Interpretations
  • Gap Analysis Results
• FAQs

Welcome to Cabana Documentation

Cabana (ColAgen FiBre ANAlyzer) is a comprehensive software tool for analyzing collagen fiber architecture in biological images. This documentation provides detailed information on installation, usage, and interpretation of results.

Quick Start

• What is Cabana?

• Installation Guide

• Image Analysis Workflows

• Parameter Settings

• Statistics Interpretation

• Citing Cabana

Support

For questions and support, please contact:

• Xufeng Lin (x.lin@garvan.org.au)

• Astrid Magenau (a.magenau@garvan.org.au)

For technical support regarding Cabana on Google Cloud:

• Tim Kallady (t.kallady@garvan.org.au)